Share Frankfurt
©Ga­brie­la Gan
Sandpit program

Syn­the­tic data for re­se­arch on rare di­sea­ses

An in­ter­di­sci­pli­na­ry team laid the ground­work for SHARE — a syn­the­tic health data re­po­sito­ry for rare di­sea­ses — at the second Sandpit work­shop of the Wübben Stif­tung Wis­sen­schaft in Frank­furt.

The goal is to create a stan­dar­di­zed, privacy-com­pli­ant, and openly ac­ces­si­ble data en­vi­ron­ment that sup­ports the trai­ning of AI models and global health re­se­arch. For rare di­sea­ses, high-quality data is often dif­fi­cult to access—or simply un­avail­ab­le. Syn­the­tic data is ar­ti­fi­ci­al­ly ge­ne­ra­ted and can reflect the sta­tis­ti­cal pro­per­ties of real data. These data are ex­tre­me­ly im­portant for cli­ni­cal re­se­arch, es­pe­ci­al­ly in the field of rare di­sea­ses. Another chal­len­ge lies in the global com­pa­ra­bi­li­ty of already trained AI models, since the da­ta­sets they are based on are often not ac­ces­si­ble. SHARE aims to close this gap by pro­vi­ding stan­dar­di­zed data for re­se­ar­chers world­wi­de.

Jannik Schaaf and Richard Noll from Goethe Uni­ver­si­ty Frank­furt led the group that ad­dres­sed the tech­ni­cal and ethical chal­len­ges of ge­ne­ra­ting and va­li­da­ting syn­the­tic data. Key in­sights from the work­shop in­clu­ded:

  • In­te­gra­ting un­st­ruc­tu­red elec­tro­nic patient data is complex, es­pe­ci­al­ly when hand­writ­ten notes are in­vol­ved.
  • A narrow disease focus fa­ci­li­ta­tes im­ple­men­ta­ti­on and project va­li­da­ti­on.
  • In­ter­na­tio­nal in­ter­ope­ra­bi­li­ty stan­dards are es­sen­ti­al (OMOP, FHIR, SNOMED CT).
  • Robust va­li­da­ti­on and quality as­suran­ce pro­ces­ses are re­qui­red for syn­the­tic data.

The results of the Sandpit work­shop “Buil­ding SHARE: the Syn­the­tic Health dAta RE­po­sito­ry” provide a solid foun­da­ti­on for ad­dres­sing key de­ve­lop­ment chal­len­ges in buil­ding a syn­the­tic health data re­po­sito­ry for rare di­sea­ses. The SHARE in­itia­ti­ve is now moving forward with the next steps toward real-world im­ple­men­ta­ti­on.

The idea behind the funding format: In­vi­t­ing re­se­ar­chers and re­le­vant sta­ke­hol­ders to work outside their comfort zone in un­con­ven­tio­nal con­stel­la­ti­ons in order to ge­ne­ra­te un­or­tho­dox ideas for pro­jec­ts and so­lu­ti­ons that set out to tackle highly re­le­vant chal­len­ges in today’s society.

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